Set up DeepSeek to draft client protocols in 8 minutes

Use the high-reasoning R1 model to turn raw notes into a structured client protocol, ready for clinical review.

8 minutes start to finish
DeepSeek (R1 / V3) setup — Set up DeepSeek to draft client protocols in 8 minutes

Turning a client's intake form, lab results, and your own research into a coherent, actionable protocol is a core task for any practitioner. This setup uses DeepSeek's R1 model to create a strong first draft, structuring your notes and saving several hours of administrative work per client.

Before you start

  • A DeepSeek account
  • A client's anonymized intake notes or lab data
  • 8 quiet minutes

The steps

  1. 01

    Select the Right Model

    Log in to your DeepSeek account and select the DeepSeek-V2 or R1 model. These models have the strongest reasoning capabilities, which are necessary for interpreting health data and structuring it logically. Avoid the lighter 'chat' version for this task.

  2. 02

    Create Your Protocol Template

    In the chat window, paste a simple markdown template for your desired output. Include headings like ## Patient Summary, ## Key Observations, ## Proposed Interventions (Diet, Supplement, Lifestyle), and ## Further Testing. This gives the model a clear structure to follow.

  3. 03

    Prime the Model with Your Research

    Paste in the key studies or mechanisms you're using to inform the protocol. For example, if you are recommending a specific form of magnesium, provide a sentence on its mechanism, like 'Magnesium L-threonate has been shown to cross the blood-brain barrier (Shen et al., 2019)'. This grounds the model's output in your evidence base as part of the Research layer of the 3-Layer Method.

  4. 04

    Input the Anonymized Client Data

    Copy and paste the client's raw, anonymized information below your research and template. This can include symptom journals, lab markers (e.g., 'Hs-CRP: 2.8 mg/L'), or intake form notes. Ensure all personally identifiable information is removed before pasting.

  5. 05

    Generate and Refine the Draft

    Use a clear, direct prompt like: 'Using the provided template, research, and client data, generate a draft protocol. For each intervention, cite the specific observation that justifies it.' Review the output, then use feedback to refine it—for example, 'Good. Now, re-write the diet section to be more specific, listing 5-7 approved foods'.

Honest note

DeepSeek's reasoning is strong for a free model, but it is not a clinical decision-making tool and has no access to a real-time, curated medical database. It can invent plausible-sounding justifications for its recommendations or misinterpret lab values. Every word of the output requires your clinical review and editing before being shared with a client.

Want the whole stack, not just one tool?

The free 10-Day Challenge wires these together. Or join the free 45-min live workshop and watch me build it end-to-end.

Want the whole method, not just one tool?

The free 10-day email challenge installs Research → Ledger → Protocol on whatever data you already collect.

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